A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize

Dataset S1. Genomic coordinates of the conserved non-coding sequence datasets (BLSSpeller, msa_pipeline, funTFBS, Song-2021, and Conservatory), accessible chromatin region compendium (ACR), unmethylated regions (UMR), and the iCREs (both the “all iCREs” and “max F1 iCREs”) constructed from them. All datasets are available both in version 4 and 5 of the maize genome. Dataset S2. Edge list files of all gene regulatory networks constructed for this study. Dataset S3. Gene ontology enrichment output of “all iCRE”-based gene regulatory networks. Supplementary Tables数据集S1：收录BLSSpeller、msa_pipeline、funTFBS、Song-2021及Conservatory四类保守非编码序列数据集、开放染色质区域汇编（ACR）、未甲基化区域（UMR），以及由此构建的分为"全iCREs"与"最大F1值iCREs"两类的基因间顺式调控元件（intergenic cis-regulatory elements，iCREs）的基因组坐标。所有数据集均可在玉米基因组版本4与版本5中获取。 数据集S2：本研究构建的全部基因调控网络的边列表文件。 数据集S3：基于"全iCREs"构建的基因调控网络的基因本体富集分析结果。 补充表格