Confusion matrix for the randomized label set used to control for the performance of TDANet and ResNet. The (<i>i</i>,<i>j</i>)th entry represents the number of colonies whose actual label was <i>i</i>, but were assigned label <i>j</i>. *There was one BMP4 colony randomly labeled as DS+CHIR, for which we had colony images but lacked the cell coordinate data. Thus, while we could use this colony for training ResNet, it was not available for use by TDANet.

Confusion matrix for the randomized label set used to control for the performance of TDANet and ResNet. The (i,j)th entry represents the number of colonies whose actual label was i, but were assigned label j. *There was one BMP4 colony randomly labeled as DS+CHIR, for which we had colony images but lacked the cell coordinate data. Thus, while we could use this colony for training ResNet, it was not available for use by TDANet.