Additional file 5 of PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes

Additional file 5: Summary of ranked pathways. This file is produced by PoMeLo and stored as ‘summary_of_ranked_pathways_organism_date.tab’ where the organism and date are specific to the analysis. This file contains a list of all of the pathways in the analysis ranked and sorted by their Predicted Metabolic Loss (PML) score. For each pathway, the total number of genes in the entire pathway and the number of genes detected in the analysis are shown (bvbrc_genes_inpathway), as well as statistics demonstrating the gene presence/pathway completeness across groups (target vs. non-target).