Additional file 5 of PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes

Additional file 5: Summary of ranked pathways. This file is produced by PoMeLo and stored as ‘summary_of_ranked_pathways_organism_date.tab’ where the organism and date are specific to the analysis. This file contains a list of all of the pathways in the analysis ranked and sorted by their Predicted Metabolic Loss (PML) score. For each pathway, the total number of genes in the entire pathway and the number of genes detected in the analysis are shown (bvbrc_genes_inpathway), as well as statistics demonstrating the gene presence/pathway completeness across groups (target vs. non-target).补充文件5：排序通路汇总表。该文件由PoMeLo生成，存储为"summary_of_ranked_pathways_organism_date.tab"，其中文件名中的物种和日期字段对应本次分析的具体信息。本文件包含本次分析中所有通路的列表，各通路按照其预测代谢损失（Predicted Metabolic Loss, PML）得分进行排序。对于每条通路，将展示该通路的总基因数、本次分析中检测到的基因数（对应字段为bvbrc_genes_inpathway），以及用于体现靶标组与非靶标组间基因存在情况/通路完整性的统计数据。