Analytical Model for Pre-Alignment Filtering in Memory

Analytical Model for Pre-Alignment Filtering in Memory used for the evaluation of the paper titled RattlesnakeJake: A Fast and Accurate Pre-Alignment Filter Suitable for Computation-in-Memory and the M.Sc. thesis of Michael Miao at QCE department. This analytical model is used to calculate the resource requirements (tile sizes, etc.) for the architectures in the research presented in the paper and the thesis given a genomic dataset.本内存预比对过滤分析模型（Analytical Model for Pre-Alignment Filtering in Memory）用于评估题为《RattlesnakeJake：一种适用于存算一体（Computation-in-Memory）架构的快速精准预比对过滤方法》的学术论文，以及QCE部门迈克尔·苗（Michael Miao）的理学硕士学位论文。该模型可针对给定的基因组数据集（genomic dataset），计算上述论文与学位论文中所研究架构的资源需求（如分块大小等）。