<b>Context-Dependent Contributions of Shrub Species Richness to Ecosystem Stability Across Tree Diversity Gradients: Insights from Microbial Mediators</b>
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Title: Context-Dependent Contributions of Shrub Species Richness to Ecosystem Stability Across Tree Diversity Gradients: Insights from Microbial MediatorsAuthors: Siqi Tao, Laiye Qu, Paul Kardol, Naili ZhangDate: 2025-04-22Corresponding Author: zhangnaili@bjfu.edu.cn<br>Description:This dataset was used to generate the results presented in the manuscript titled "Context-Dependent Contributions of Shrub Species Richness to Ecosystem Stability Across Tree Diversity Gradients: Insights from Microbial Mediators", submitted to Ecology Letters. ---<br>File List:1. Figure 1-6.R — Scripts used to generate figures 1-6.2. Figure S1-S5.R — Scripts used for supplementary figures 1-5.3. Metadata.csv - Sample metadata and environmental variables (see variable descriptions below).4. path_abun_unstrat.tsv - PICRUSt2 output of unstratified pathway abundances.5. guild_count_Funguild.csv - Fungal guild assignments and counts from FUNGuild.6. KEGG_pathway_classification. - KEGG classification (Level 1–3) of predicted pathways.7. picrust_pathway_combined.csv - Combined pathway output from multiple samples.8. feature-table-bac_re.tsv - Feature (ASV) table for bacterial communities (QIIME2 format).9. feature-table-fungi_re.tsv - Feature table for fungal communities (QIIME2 format).10. taxonomy-filtered-bacteria_re.csv - Taxonomic classification for bacterial ASVs.11. taxonomy-filtered-fungi_re.csv - Taxonomic classification for fungal ASVs.12. tree.txt - FASTA sequences of hub taxa in bacterial and fungal communities used for phylogenetic tree construction.13. muscle.aln - Multiple sequence alignment file from MUSCLE (used for phylogeny).14. B_asv_data.csv - Amplicon GC content and basecount of bacterial ASVs15. F_asv_data.csv - Amplicon GC content and basecount of fungal ASVs
标题：灌木物种丰富度沿树木多样性梯度对生态系统稳定性的情境依赖贡献：来自微生物介导者的启示（Context-Dependent Contributions of Shrub Species Richness to Ecosystem Stability Across Tree Diversity Gradients: Insights from Microbial Mediators） 作者：陶思琪，屈来叶，保罗·卡尔多，张乃莉 日期：2025年4月22日 通讯作者：zhangnaili@bjfu.edu.cn 描述：本数据集用于生成投稿至《Ecology Letters》的题为《灌木物种丰富度沿树木多样性梯度对生态系统稳定性的情境依赖贡献：来自微生物介导者的启示》的手稿中呈现的全部研究结果。 文件列表： 1. Figure 1-6.R：用于生成图1至图6的R脚本 2. Figure S1-S5.R：用于生成补充图1至图5的R脚本 3. Metadata.csv：样本元数据（Metadata）与环境变量表（详见下方变量说明） 4. path_abun_unstrat.tsv：未分层通路丰度的PICRUSt2输出文件 5. guild_count_Funguild.csv：FUNGuild输出的真菌功能群分类与计数文件 6. KEGG_pathway_classification.：预测通路的KEGG（京都基因与基因组百科全书，Kyoto Encyclopedia of Genes and Genomes）分类（层级1至3） 7. picrust_pathway_combined.csv：多样本合并的PICRUSt2通路输出文件 8. feature-table-bac_re.tsv：细菌群落的扩增子序列变体（Amplicon Sequence Variant，ASV）特征表（QIIME2格式） 9. feature-table-fungi_re.tsv：真菌群落的ASV特征表（QIIME2格式） 10. taxonomy-filtered-bacteria_re.csv：过滤后的细菌ASV分类学注释文件 11. taxonomy-filtered-fungi_re.csv：过滤后的真菌ASV分类学注释文件 12. tree.txt：用于构建系统发育树的细菌与真菌群落关键类群的FASTA序列文件 13. muscle.aln：来自MUSCLE的多序列比对文件（用于系统发育分析） 14. B_asv_data.csv：细菌ASV的扩增子GC含量与碱基计数文件 15. F_asv_data.csv：真菌ASV的扩增子GC含量与碱基计数文件
