Gene Content in B. hypnoides and Other UTC Algal cpDNAs.

Cv: Chlorella vulgaris, Lt: Leptosira terrestris, Ov: Oltmannsiellopsis viridis, Pa: Pseudendoclonium akinetum, By: Bryopsis hypnoide, Cr: Chlamydomonas reinhardtii, So: Scenedesmus obliquus, Sh: Stigeoclonium helveticum, Oc: Oedogonium cardiacum. A filled/open circle denotes the presence/absence of a gene. Only the genes that are missing in one or more genomes are indicated. A total of 84 genes are shared by all compared cpDNAs: atpA, B, E, F, H, I, cemA, clpP, petB, D, G, L, psaA, B, C, J, psbA, B, C, D, E, F, H, I, J, K, L, M, N, T, Z, rbcL, rpl2, 5, 14, 16, 20, 23, 36, rpoA, B, C2, rps2, 3, 4, 7, 8, 9, 11, 12, 14, 18, 19, rrf, rrl, rrs, tufA, ycf3, 4, trnA(ugc), C(gca), D(guc), E(uuc), F(gaa), G(gcc), G(ucc), H(gug), I(gau), K(uuu), L(uaa), L(uag), Me(cau), Mf(cau), N(guu), P(ugg), Q(uug), R(acg), R(ucu), S(gcu), S(uga), T(ugu), V(uac), W(cca), Y(gua).Cv：普通小球藻（Chlorella vulgaris），Lt：陆生细管藻（Leptosira terrestris），Ov：绿色奥尔曼斯藻（Oltmannsiellopsis viridis），Pa：类假根藻（Pseudendoclonium akinetum），By：羽藻（Bryopsis hypnoides），Cr：莱茵衣藻（Chlamydomonas reinhardtii），So：斜生栅藻（Scenedesmus obliquus），Sh：瑞士桩藻（Stigeoclonium helveticum），Oc：心形鞘藻（Oedogonium cardiacum）。实心圆圈与空心圆圈分别代表某基因的存在与缺失。本数据集仅标注在一个或多个比对基因组中发生缺失的基因。所有参与比对的叶绿体DNA（cpDNAs，chloroplast DNAs）共共享84个保守基因，具体包括：atpA、atpB、atpE、atpF、atpH、atpI、cemA、clpP、petB、petD、petG、petL、psaA、psaB、psaC、psaJ、psbA、psbB、psbC、psbD、psbE、psbF、psbH、psbI、psbJ、psbK、psbL、psbM、psbN、psbT、psbZ、rbcL、rpl2、rpl5、rpl14、rpl16、rpl20、rpl23、rpl36、rpoA、rpoB、rpoC2、rps2、rps3、rps4、rps7、rps8、rps9、rps11、rps12、rps14、rps18、rps19、rrf、rrl、rrs、tufA、ycf3、ycf4、trnA(ugc)、trnC(gca)、trnD(guc)、trnE(uuc)、trnF(gaa)、trnG(gcc)、trnG(ucc)、trnH(gug)、trnI(gau)、trnK(uuu)、trnL(uaa)、trnL(uag)、trnMe(cau)、trnMf(cau)、trnN(guu)、trnP(ugg)、trnQ(uug)、trnR(acg)、trnR(ucu)、trnS(gcu)、trnS(uga)、trnT(ugu)、trnV(uac)、trnW(cca)、trnY(gua)。