Datasets for Twort et al. Signals of positive selection in Palearctic bat species coexisting with a fungal pathogen

Datasets used in Twort et al: Signals of positive selection in Palearctic bat species coexisting with a fungal pathogen Included are final gene alignments and tree files from the Phylogenetic Dataset (2515 genes) and the curated dataset (300 genes). Phylogenetic Dataset Files: BUSCO Dataset: 2515 genes extracted from the Mammalia_odb10 BUSCO database. This dataset was used for phylogeney construction and branch tests Align_BUSCO: Contains the final cleaned alignments used for the 2515 Phylogenetic dataset genes (after gblocks) in fasta format Contree_BUSCO.zip: Contains the consensus tree constructed with IQ-Tree for the 2,515 phylogenetic gene dataset (used as input for ASTRAL,and for branch tests) Ufboot_BUSCO.zip: Contains the bootstrap trees from IQ-Tree for the 2,515 gene dataset Branch_Myoluc_labelled_BUSCO.zip: Final labelled trees, with Myotis lucifugus labelled as foreground branch from the 2,515 gene dataset used for PAML branch tests, all bootstrap values and branch lengths have been removed. Branch_Myomyo_labelled_BUSCO.zip: Final labelled trees, with Myotis myotis labelled as foreground branch from the 2,515 gene dataset used for PAML branch tests, all bootstrap values and branch lengths have been removed. Curated Dataset Files: PAML Dataset - 300 gene set, This dataset was used for codon tests (PAML) Align_Paml: Contains the final cleaned alignments for the 300 gene dataset (after gblocks) in fasta format Contree_PAML: Contains the consensus trees constructed with IQ-Tree for the 300 gene dataset Version 2 corrects a sample labelling mistake present in Version 1.Twort等人研究中使用的数据集：与真菌病原体共存的古北界蝙蝠物种的正选择信号 本数据集包含系统发育数据集（2515个基因）与精选数据集（300个基因）的最终基因比对文件及树文件。 系统发育数据集文件： BUSCO数据集：从Mammalia_odb10 BUSCO数据库中提取的2515个基因，该数据集用于系统发育树构建与分支检验。 Align_BUSCO：包含用于该2515个基因系统发育数据集的最终清理后比对文件（经gblocks处理），格式为fasta。 Contree_BUSCO.zip：包含针对该2515个基因的系统发育基因数据集，由IQ-Tree构建的共识树文件（可作为ASTRAL的输入文件，同时用于分支检验）。 Ufboot_BUSCO.zip：包含针对该2515个基因数据集，由IQ-Tree生成的自助法抽样树文件。 Branch_Myoluc_labelled_BUSCO.zip：针对该2515个基因数据集、用于PAML分支检验的最终标记树文件，其中以Myotis lucifugus作为前景分支，且已移除所有自助法置信值与分支长度信息。 Branch_Myomyo_labelled_BUSCO.zip：针对该2515个基因数据集、用于PAML分支检验的最终标记树文件，其中以Myotis myotis作为前景分支，且已移除所有自助法置信值与分支长度信息。 精选数据集文件： PAML数据集：包含300个基因的集合，该数据集用于密码子水平检验（PAML）。 Align_Paml：包含该300个基因数据集的最终清理后比对文件（经gblocks处理），格式为fasta。 Contree_PAML：包含针对该300个基因数据集，由IQ-Tree构建的共识树文件。 版本2修正了版本1中存在的样本标记错误。