遇见数据集

Local adaptation in the Patagonian foundation tree species Nothofagus pumilio

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Zenodo2023-11-20 更新2026-05-26 收录
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These data include called SNP variants of the Patagonian foundation tree species <em>Nothofagus pumilio</em>. Data for 502 individual tree samples are included: 496 adult trees and 6 replicates. variants-gatk_haplotypecaller_SNP_raw.vcf.gz and .tbi are raw called variants. variants-gatk_haplotypecaller_SNP.vcf.gz and .tbi are leniently quality filtered using best practice thresholds.

本数据集涵盖巴塔哥尼亚地区建群树种南山毛榉(*Nothofagus pumilio*)的单核苷酸多态性(Single Nucleotide Polymorphism,SNP)变异检测结果。共收录502个林木个体样本,其中496株为成年个体,6株为生物学重复样本。variants-gatk_haplotypecaller_SNP_raw.vcf.gz及其配套索引文件.tbi为原始变异检测结果;variants-gatk_haplotypecaller_SNP.vcf.gz及其配套索引文件.tbi则是依据行业最佳实践质量阈值完成宽松质控过滤后的变异数据集。

提供机构:
Zenodo
创建时间:
2023-05-12
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