five

Chromosome-level genome assembly of Calamus simplicifolius

收藏
DataCite Commons2025-05-26 更新2025-04-15 收录
下载链接:
http://gigadb.org/dataset/101052
下载链接
链接失效反馈
官方服务:
资源简介:
<i>Calamus simplicifolius</i> is a spiny, evergreen, climbing palm, usually forming an open cluster of vigorous, unbranched stems that can reach a length of 50 metres and about 12 - 15mm in diameter. This species produces cane of medium diameter, supreme for all types of binding and weaving in the furniture industry and widely used in China for cordage, house construction and the finest basketware. <br> The lack of reference genome sequences is a major obstacle for basic and applied biology on rattan. Here we provide the chromosome-level genome assembly of <i>C. simplicifolius</i> using the Illumina, PacBio, and Hi-C sequencing data. A total of ~730 Gb of raw data covering the predicted genome length ~1.98 Gb to ~ 372× read depth. The de novo genome assembly of ~1.94 Gb generated a scaffold N50 of ~160 Mb with 51,235 intact predicted protein-coding gene models. BUSCO evaluation demonstrated that the genome completeness reached 96.4%. <br>These essential data will not only provide a fundamental resource of functional genomics particularly in promoting germplasm utilization for breeding improved rattan material property, but also will serve as a reference genome for performing comparative studies between and among different species.
提供机构:
GigaScience Database
创建时间:
2018-07-18
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作