Software and database resource mentions across the whole of PubMed Central full-text articles

This is a compressed .sql.gz file of a MySQL database dump. The table contains the automatically extracted mentions of database and software resource names as extracted by bioNerDS across the full sub-set of open-access full-text PubMed Central articles. Each matched resource is identified by name, text offsets and "normalised" name, and also includes details of the rules from which the name was matched. This dataset is one of the primary research contributions of my PhD work, and a paper currently being finalised for submission to PLoS Computational Biology.本数据集为MySQL数据库导出的压缩.sql.gz格式文件。该数据表包含由bioNerDS从开放获取全文PubMed Central文章完整子集自动提取的数据库与软件资源名称提及条目。每条匹配得到的资源均通过名称、文本偏移量与"标准化"名称进行标识，同时还包含该资源名称所匹配的规则细节。本数据集为本人博士研究的核心学术贡献之一，相关研究论文目前已定稿，拟投稿至《公共科学图书馆·计算生物学（PLoS Computational Biology）》期刊。