RRID Gold Set of annotations for software tools in the biomedical literature

This data is a subset of a larger human curated, machine assisted gold standard data set of RRID citations within the text of the scientific literature. The full set is accessible via Hypothes.is at https://hypothes.is/users/scibot?q=group%3A__world__ and via individual RRID records such as RRID:SCR_016250 https://scicrunch.org/resolver/SCR_016250/mentions?q=&i=rrid:scr_016250 The data is based on authors who added RRIDs into their manuscripts. The data was then extracted by SciBot (RRID:SCR_016250), into Hypothes.is (RRID:SCR_000430) and then manually checked by a curator to determine if the author and the database agreed. The list of annotators is available in Hypothes.is user group: SciBotCurationGroup. There are 78,140 rows and each row contains an annotation (annotation id, URI), linked to a paper (paper identifiers: PMID, DOI, PMC) and linked to the RRID (scr_id, exact, text_quote_selector). A second spreadsheet contains a list of 8,322 software tools from the SciCrunch Registry (available here https://scicrunch.org/resources/data/source/nlx_144509-1/search ), enhanced by additions by thousands of individual authors, and curated over 10 years (Ozyurt et al., 2016). The third spreadsheet contains a data dictionary and links to related ontologies, and tagging sets.本数据集为一套经人工编校、机器辅助构建的科研文献文本内研究资源标识符（Research Resource Identifier，RRID）引用金标准数据集的子集。完整数据集可通过Hypothes.is平台（访问地址：https://hypothes.is/users/scibot?q=group%3A__world__）以及单条RRID记录（如RRID:SCR_016250，对应访问地址为https://scicrunch.org/resolver/SCR_016250/mentions?q=&i=rrid:scr_016250）获取。 本数据集基于在稿件中添加了RRID的作者群体构建。随后由SciBot（RRID:SCR_016250）将相关数据提取至Hypothes.is平台（RRID:SCR_000430），再由编校人员人工核查以确认作者标注内容与数据库记录是否一致。注释员列表可在Hypothes.is用户组SciBotCurationGroup中获取。 本数据集共包含78140条记录，每条记录均包含一条注释（含注释ID、统一资源标识符URI），关联至对应学术论文（论文标识符包含PMID、DOI、PMC），并关联至对应的RRID（含scr_id、exact、text_quote_selector）。 第二个电子表格包含来自SciCrunch资源注册表的8322个软件工具列表（访问地址：https://scicrunch.org/resources/data/source/nlx_144509-1/search），该列表经数千位作者补充完善，并经过长达10年的编校（Ozyurt等人，2016）。 第三个电子表格包含数据字典，以及指向相关本体与标签集的链接。