遇见数据集

Towards a rapid sequencing-based molecular surveillance and mosaicism investigation of Toxoplasma gondii (nucleotide alignment dataset)

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Zenodo2024-01-07 更新2026-05-25 收录
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This dataset includes the nucleotide alignment of eight Toxoplasma gondii genome loci (Sag1 / Chromossome VIII, Gra6 / Chromossome X, PK1 / Chromossome VI, Sag3 / Chromossome XII, L363 / Chromossome VIIb, CB21-4 / Chromossome III, M102 / Chromossome VIIa, Sag2 / Chromossome VIII). Each alignment includes sequences from T. gondii reference strains (retrieved from ToxoDB) as well as sequences from multiple clinical strains (obtained by Sanger / Next-generation sequencing) of the collection of the National Reference Laboratory of Parasitic and Fungal Infections, Department of Infectious Diseases, National Institute of Health Dr. Ricardo Jorge, Portugal.

本数据集包含8个刚地弓形虫(Toxoplasma gondii)基因组位点的核苷酸序列比对结果,涉及的位点分别为:Sag1(第VIII号染色体)、Gra6(第X号染色体)、PK1(第VI号染色体)、Sag3(第XII号染色体)、L363(第VIIb号染色体)、CB21-4(第III号染色体)、M102(第VIIa号染色体)以及Sag2(第VIII号染色体)。每组序列比对均包含从ToxoDB数据库获取的刚地弓形虫参考株序列,同时收录葡萄牙里卡多·豪尔赫国家卫生研究所传染病部寄生虫与真菌感染国家参考实验室保藏的多株临床分离株序列,上述临床序列通过桑格(Sanger)测序与下一代测序(Next-generation sequencing)获得。

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Zenodo
创建时间:
2019-06-27
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