遇见数据集

Comparative genomics - OrthoVenn2 cluster analysis results

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Figshare2020-07-08 更新2026-04-28 收录
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Following a run on the OrthoVenn2 server (performed on July 3, 2020), the results of a comparison between the official proteins sets for Trichogramma brassicae (Ferguson et al 2020 pending) and Trichogramma pretiosum (Lindsay et al 2016).Several results can be found:- Entire cluster list (.txt file where each line is a cluster ID followed by protein IDs)- Cluster lists for the T. brassicae unique clusters, T. pretiosum unique clusters, and the shared T. brassicae and T. pretiosum clusters (3 separate .txt files where each line is a cluster ID followed by protein ID)- Cluster list for single-copy gene clusters between the two species, and singleton lists for both species (3 separate .txt files, same style as other cluster lists)- GO term enrichment analysis for clusters between both species and for T. brassicae (no results for T. pretiosum alone) (2 .txt files, where first column is GO term ID, second column is number of clusters that ascribe to that GO term, and the third column is official definition of that GO term - can be followed up via other GO term databases)

2020年7月3日于OrthoVenn2服务器完成分析后,本数据集包含甘蓝赤眼蜂(Trichogramma brassicae,Ferguson等,2020待刊)与普氏赤眼蜂(Trichogramma pretiosum,Lindsay等,2016)官方蛋白质集合的比较分析结果。可获取的分析结果包括:1. 全聚类列表(.txt格式文件,每行依次为聚类ID与对应蛋白质ID);2. 甘蓝赤眼蜂特有聚类列表、普氏赤眼蜂特有聚类列表,以及二者共享聚类列表(共3份独立.txt文件,格式与上述全聚类列表一致,每行依次为聚类ID与对应蛋白质ID);3. 两物种间单拷贝基因聚类列表,以及两物种各自的单例基因列表(共3份独立.txt文件,格式与其他聚类列表一致);4. 两物种间全部聚类以及甘蓝赤眼蜂聚类的基因本体(Gene Ontology, GO)术语富集分析结果(未获取到仅针对普氏赤眼蜂的此类分析结果),共2份.txt格式文件,文件各列依次为GO术语ID、归属该GO术语的聚类数量,以及该GO术语的官方定义,可通过其他GO术语数据库进一步查询。

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2020-07-08
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