Additional file 1 of A common regulatory haplotype doubles lactoferrin concentration in milk

Additional file 1: Table S1. ChIP-seq H3K27ac peak locations (MACS). Table S2. ChIP-seq H3K4Me1 peak locations (MACS). Table S3. ChIP-seq H3K4Me3 peak locations (MACS). Table S4. ATAC-seq peak locations (MACS). Table S5. Lf pQTL (LogPeak) variant effects. Table S6. Lf pQTL (LogMid) variant effects. Table S7. Lf pQTL (LogLate) variant effects. Table S8. Lf pQTL (Aggregate) variant effects. Table S9. LTF eQTL variant effects. Table S10. ChIP-seq H3K27ac hQTL variant effects. Table S11. ChIP-seq H3K4Me1 hQTL variants effects. Table S12. ChIP-seq H3K4Me3 hQTL variant effects. Table S13. ATAC-seq caQTL variant effects. Table S14. Correlations between the LTF eQTL and hQTL/caQTL. Table S15. Correlations between the LogPeak pQTL and hQTL/caQTL. Table S16. Core haplotype variants and association statistics. Table S17. Predicted TFBSs under ChIP-seq/ATAC-seq peaks with significant hQTL/caQTL.附加文件1：表S1。染色质免疫共沉淀测序（ChIP-seq）H3K27ac修饰峰位（MACS算法鉴定）。表S2。ChIP-seq H3K4Me1修饰峰位（MACS算法鉴定）。表S3。ChIP-seq H3K4Me3修饰峰位（MACS算法鉴定）。表S4。转座酶可及性测序（ATAC-seq）峰位（MACS算法鉴定）。表S5。Lf数量性状位点（pQTL，LogPeak）变异效应。表S6。Lf pQTL（LogMid）变异效应。表S7。Lf pQTL（LogLate）变异效应。表S8。Lf pQTL（Aggregate）变异效应。表S9。LTF表达数量性状位点（eQTL）变异效应。表S10。ChIP-seq H3K27ac修饰数量性状位点（hQTL）变异效应。表S11。ChIP-seq H3K4Me1修饰hQTL变异效应。表S12。ChIP-seq H3K4Me3修饰hQTL变异效应。表S13。ATAC-seq染色质可及性数量性状位点（caQTL）变异效应。表S14。LTF eQTL与hQTL/caQTL的相关性分析结果。表S15。LogPeak型pQTL与hQTL/caQTL的相关性分析结果。表S16。核心单倍型变异及关联统计量。表S17。携带显著hQTL/caQTL的ChIP-seq/ATAC-seq峰区内的预测转录因子结合位点（TFBS）。