Genome assembly, quality-control, annotation, and phylogenomic data for Pediococcus acidilactici strain AP1 isolated from common carp

This dataset contains quality-control reports, genome assembly files, structural and functional genome annotations, CRISPR-Cas analysis results, and genome-based phylogenetic data for Pediococcus acidilactici strain AP1. Strain AP1 was isolated from the intestinal tract of a healthy common carp (Cyprinus carpio) collected from a fish farm in the Tashkent region, Uzbekistan. Whole-genome sequencing was performed using the Illumina MiSeq i100 Plus platform with paired-end sequencing. Reads were quality assessed using FastQC and filtered using fastp. De novo assembly was performed using SPAdes. Assembly quality was evaluated using QUAST, BUSCO, and CheckM2. Structural and functional annotation was performed using PGAP, Prokka, RAST, eggNOG-mapper, and InterProScan. CRISPR-Cas loci were evaluated using CRISPRCasFinder, and genome-based phylogenetic analysis was performed using TYGS. DATA ACCESSIONS BioProject: PRJNA1476265 BioSample: SAMN60696776 SRA: SRR39936145 Assembly: GCA_058312935.1 WGS: JBZEGU000000000本数据集包含乳酸片球菌（Pediococcus acidilactici）AP1菌株的质量控制报告、基因组组装文件、基因组结构与功能注释文件、CRISPR-Cas分析结果，以及全基因组系统发育数据。AP1菌株分离自乌兹别克斯坦塔什干地区某渔场采集的健康普通鲤鱼（Cyprinus carpio）肠道。本研究采用Illumina MiSeq i100 Plus平台完成双端全基因组测序；测序读段（Reads）通过FastQC进行质量评估，并借助fastp完成过滤。采用SPAdes进行从头基因组组装（de novo assembly），组装质量通过QUAST、BUSCO及CheckM2进行评估。结构与功能注释采用PGAP、Prokka、RAST、eggNOG-mapper及InterProScan完成。CRISPR-Cas基因座通过CRISPRCasFinder进行分析，全基因组系统发育分析则借助TYGS完成。 数据登录号： BioProject: PRJNA1476265 BioSample: SAMN60696776 SRA: SRR39936145 Assembly: GCA_058312935.1 WGS: JBZEGU000000000