DICOM converted Slide Microscopy images for the TCGA-ACC collection

This dataset corresponds to a collection of images and/or image-derived data available from National Cancer Institute Imaging Data Commons (IDC) [1]. This dataset was converted into DICOM representation and ingested by the IDC team. You can explore and visualize the corresponding images using IDC Portal here: TCGA-ACC. You can use the manifests included in this Zenodo record to download the content of the collection following the Download instructions below. Collection description Adrenocortical carcinoma is a rare cancer that develops in the outer layer of tissue of the adrenal glands, organs that lie on top of each kidney. This outer layer known as the adrenal cortex produces important hormones called steroids that help the body deal with stress, regulate blood pressure and the amount of salt in the blood, as well as cause the body to acquire masculine or feminine characteristics. A tumor of the adrenal cortex can produce either no hormones or excess hormones. Please see the TCGA-ACC information page to learn more about the images and to obtain any supporting metadata for this collection. Citation guidelines can be found on the Citing TCGA in Publications and Presentations information page. Files included A manifest file's name indicates the IDC data release in which a version of collection data was first introduced. For example, collection_id-idc_v8-aws.s5cmd corresponds to the contents of the collection_id collection introduced in IDC data release v8. If there is a subsequent version of this Zenodo page, it will indicate when a subsequent version of the corresponding collection was introduced. tcga_acc-idc_v10-aws.s5cmd: manifest of files available for download from public IDC Amazon Web Services buckets tcga_acc-idc_v10-gcs.s5cmd: manifest of files available for download from public IDC Google Cloud Storage buckets tcga_acc-idc_v10-dcf.dcf: Gen3 manifest (for details see https://learn.canceridc.dev/data/organization-of-data/guids-and-uuids) Note that manifest files that end in -aws.s5cmd reference files stored in Amazon Web Services (AWS) buckets, while -gcs.s5cmd reference files in Google Cloud Storage. The actual files are identical and are mirrored between AWS and GCP. Download instructions Each of the manifests include instructions in the header on how to download the included files. To download the files using .s5cmd manifests: install idc-index package: pip install --upgrade idc-index download the files referenced by manifests included in this dataset by passing the .s5cmd manifest file: idc download manifest.s5cmd. To download the files using .dcf manifest, see manifest header. Acknowledgments Imaging Data Commons team has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l. References [1] Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S. D., Gibbs, D. L., Bridge, C., Herrmann, M. D., Homeyer, A., Lewis, R., Aerts, H. J. W., Krishnaswamy, D., Thiriveedhi, V. K., Ciausu, C., Schacherer, D. P., Bontempi, D., Pihl, T., Wagner, U., Farahani, K., Kim, E. & Kikinis, R. National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence. RadioGraphics (2023). https://doi.org/10.1148/rg.230180本数据集汇集了源自美国国家癌症研究所影像数据共享平台（National Cancer Institute Imaging Data Commons, IDC）[1] 所提供的图像及图像衍生数据，已由IDC团队转换为DICOM格式并完成数据入库。您可通过IDC门户的TCGA-ACC页面浏览并可视化对应图像。您可借助本Zenodo记录中包含的清单文件，按照下方的下载说明下载该数据集的全部内容。 ### 数据集说明 肾上腺皮质癌是一种罕见癌症，起源于附着于双侧肾脏上方的肾上腺外层组织。该外层（即肾上腺皮质）可分泌重要的类固醇类激素，协助机体应对应激刺激、调节血压与血钠水平，并调控机体的性别特征发育。肾上腺皮质肿瘤可表现为激素分泌异常，既可能无激素分泌，也可能出现激素过度分泌的情况。 如需了解更多关于本数据集图像的详细信息并获取配套元数据，请访问TCGA-ACC信息页面。 引用规范可参阅《出版物与展示中引用TCGA数据集》相关页面。 ### 包含文件 清单文件名标识了该数据集版本首次被纳入的IDC数据发布版本。例如，`collection_id-idc_v8-aws.s5cmd`对应首次在IDC数据发布版本v8中推出的`collection_id`数据集。若本Zenodo页面后续更新，将同步标注对应数据集的新增版本信息。 本次数据集包含以下三类清单文件： 1. `tcga_acc-idc_v10-aws.s5cmd`：用于从IDC公开亚马逊云科技（Amazon Web Services, AWS）存储桶中下载文件的清单 2. `tcga_acc-idc_v10-gcs.s5cmd`：用于从IDC公开谷歌云存储（Google Cloud Storage）存储桶中下载文件的清单 3. `tcga_acc-idc_v10-dcf.dcf`：Gen3格式清单（详情请参阅https://learn.canceridc.dev/data/organization-of-data/guids-and-uuids 注意：文件名以`-aws.s5cmd`结尾的清单对应存储于AWS存储桶的文件，而`-gcs.s5cmd`结尾的清单对应谷歌云存储中的文件。实际文件内容完全一致，且在AWS与谷歌云平台（Google Cloud Platform, GCP）间实现镜像同步。 ### 下载说明 每份清单的文件头中均包含对应文件的下载指引。 1. 使用`.s5cmd`格式清单下载文件： - 安装idc-index工具包：`pip install --upgrade idc-index` - 通过传入对应的.s5cmd格式清单下载本数据集引用的文件：`idc download manifest.s5cmd` 2. 使用`.dcf`格式清单下载文件，请参阅清单文件头中的详细指引。 ### 致谢 本影像数据共享平台团队的研究工作全部或部分获得了美国国家癌症研究所、美国国立卫生研究院的联邦资金资助，项目编号为HHSN26110071，所属合同编号为HHSN261201500003l。 ### 参考文献 [1] Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S. D., Gibbs, D. L., Bridge, C., Herrmann, M. D., Homeyer, A., Lewis, R., Aerts, H. J. W., Krishnaswamy, D., Thiriveedhi, V. K., Ciausu, C., Schacherer, D. P., Bontempi, D., Pihl, T., Wagner, U., Farahani, K., Kim, E. & Kikinis, R. National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence. RadioGraphics (2023). https://doi.org/10.1148/rg.230180