To study the relationship between host-pathogen adaptation and coreceptor usage of HIV-1, the viral env and p24 proteins were sequenced of subtype C, chronic, treatment-naive HIV-infected patients
Here are the associated files for the dissertation of Xavier Bonner Chapter 3 "Identifying Sequence Positions In Gp120 that are Important for Replicating in Low CD4 Cells in the CNS." The input files
Previously not capable in the original HIVToolbox application. Conservation can be examined for all viruses or within subtypes. NP_705926 is used as the reference sequence for protease.
