Additional file 1 of Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding

Additional file 1: Table S1. Summary of NDM founder varieties and sequencing coverage. Table S2. Summary of overlap in sites called from wheat breeders’ genotyping array and SNP sites called in founders from sequencing data. Table S3. Summary of evidence for introgressions segregating among NDM founders. Table S4. Summary of trial inputs and conditions in 2016-17 (year 1) and 2017-18 (year 2). Table S5. Description of all phenotype measurement methods and timings. Table S6. Best Linear Unbiased Estimate for all phenotypes in 504 RILs. Table S7. Summary of all genome-wide significant QTL associations found for SNP-based and Haplotype-based mapping. Table S8. Gene-Deletion-Score (GDS) loci with GDS-phenotype associations with logP> 6. Table S9. Summary of crossing scheme.附加文件1：表S1。NDM创始品种及测序覆盖度概况。表S2。小麦育种者基因分型阵列检测到的位点与通过测序数据在创始品种中检测到的单核苷酸多态性（SNP）位点的重叠情况汇总。表S3。NDM创始品种间分离的渐渗片段相关证据汇总。表S4。2016-2017年（第1年度）与2017-2018年（第2年度）的试验投入与试验条件汇总。表S5。所有表型测量方法及测量时间说明。表S6。504个重组自交系（Recombinant Inbred Lines, RILs）的所有表型的最佳线性无偏估计值。表S7。基于单核苷酸多态性（SNP）与基于单倍型的连锁作图中发现的所有全基因组显著数量性状位点（Quantitative Trait Locus, QTL）关联情况汇总。表S8。基因缺失评分（Gene-Deletion-Score, GDS）位点及logP>6的GDS-表型关联情况汇总。表S9。杂交方案汇总。