Dataset supporting "SEgene identifies links between super enhancers and gene expression across cell types"

Processed RNA-seq & ChIP-seq dataset as analyzed in the paper “SEgene identifies links between super enhancers and gene expression across cell types” (npj Systems Biology & Applications, 2025; DOI: 10.1038/s41540-025-00533-x). This dataset can be used to reproduce relevant analyses from the paper and/or to test the associated SEgene software.
Relate Code:
https://github.com/hamamoto-lab/SEgeneOriginal Data Source:
This dataset is derived from the public dataset GSE156614, available at NCBI GEO.
How to Cite:
When using this data, please cite both the original paper and this Figshare dataset:
1. Original Paper:
Shinkai N., Asada K., Machino H., Takasawa K., Takahashi S., Kouno N., Komatsu M., Hamamoto R. & Kaneko S. (2025). SEgene identifies links between super enhancers and gene expression across cell types. npj Systems Biology and Applications. DOI: 10.1038/s41540-025-00533-x
2. This Figshare Dataset:
Please use the citation automatically generated by Figshare for this record (DOI: 10.6084/m9.figshare.28171127). This can typically be found on the dataset's Figshare page.