Supporting material for "A hierarchical immune receptor network in lettuce reveals contrasting patterns of evolution in sensor and helper NLRs"

Description AF3.zip AlphaFold 3 predicted structures for monomeric and hexameric NRC helper and sensor sequences. GFF.zip Simplified GFF annotation of selected Asterales species used for gene-distance analysis. PAML.zip Codon-based nucleotide sequences, phylogenetic trees, and CodeML input and output files from PAML sites test analysis. Files are divided between domain-based analysis and full-length analysis for each NRC subclade. PAML_branch.zip Codon-based nucleotide sequences, phylogenetic trees, and CodeML input and output files from PAML branch-site test analysis. Files are divided between domain-based analysis and full-length analysis for each NRC subclade. trees.zip Phylogenetic trees generated and used in the analysis and making of the figures. sequences.zip Nucleotide sequences and amino acid alignments of Lactuca NRC helpers and sensors.数据集说明 AF3.zip：存储针对单体及六聚体NRC辅助蛋白与感应蛋白序列的AlphaFold 3预测结构文件。 GFF.zip：涵盖用于基因距离分析的选定菊目物种的GFF（General Feature Format）简化注释文件。 PAML.zip：包含基于密码子的核苷酸序列、系统发育树，以及PAML（Phylogenetic Analysis by Maximum Likelihood）位点模型测试分析生成的CodeML输入与输出文件；所有文件按NRC亚分支分为结构域分析与全长序列分析两类。 PAML_branch.zip：包含基于密码子的核苷酸序列、系统发育树，以及PAML分支位点模型测试分析生成的CodeML输入与输出文件；所有文件按NRC亚分支分为结构域分析与全长序列分析两类。 trees.zip：包含本分析及绘图所用的系统发育树文件。 sequences.zip：包含莴苣属NRC辅助蛋白与感应蛋白的核苷酸序列及氨基酸比对文件。