Eltham copper butterfly <i>Paralucia pyrodiscus</i>: scoping genetic rescue

This repository includes the data, text and supplementary material for the manuscript:Roitman, M., Gardner, M.G., New, T.R., Nguyen, T.T.T., Roycroft, E.J., Sunnucks, P., Yen, A.L., Harrisson, K.A., 2017. <i>Assessing the scope for genetic rescue of an endangered butterfly: the case of the Eltham copper</i>. Insect Conservation and Diversity 10, 399–414. <br><b>Final version of the manuscript:</b>Roitman_etal_ICD_final.docx<br><b>Supplementary Material for the manuscript:</b>icad12235-sup-0001-appendix.A.doc -- DNA extractions of larvae samplesicad12235-sup-0002-appendix.B.pdf -- Primer sequencesicad12235-sup-0003-appendix.C.doc -- Nuclear primer designicad12235-sup-0004-appendix.D.pdf -- PCR conditionsicad12235-sup-0005-appendix.E.doc -- Summary of MIGRATE-N analysisicad12235-sup-0006-appendix.F.doc -- Genetic diversity statisticsicad12235-sup-0007-appendix.G.doc -- Summary of *BEAST analysis in treeformicad12235-sup-0008-appendix.H.doc -- Summary of STRUCTURE analysisbased on all P. pyrodiscus samplesicad12235-sup-0009-appendix.I.pdf -- Sample informationicad12235-sup-0009-appendix.I Sample database in excel form.xls<br><b>Genotypes for nuclear sequencing data and results of GenAlEx analyses:</b>Heterozygosity nuclear_KH.xlsx<br><b>Mitochondrial sequencing data, in nexus format (‘traits’ are locations):</b>Concatenated CO1 ND5 mitochondria.nexNucleotide alignment CO1ND5_concatenated_traits.nex<br>Nucleotide alignment CO1_Ktrimmed.nexNucleotide alignment CO1_Ktrimmed_traits.nex<br>Nucleotide alignment ND5_Ktrimmed.nexNucleotide alignment ND5_Ktrimmed_traits.nex<br><b>Phased nuclear sequences for five anonymous single copy nuclear loci, in nexus format:</b>63EA_phased.nexA7D8_phased.nexS5ZW_phased_updated.nexO3W6_phased_updated.nexZ5V8_phased.nex