Genotyping error rates among software packages with default settings.

Default minimum read depth; AmpliSAS, 100 reads; Megasat, 50 reads; CHIIMP, 500 reads; MicNeSs, 16 reads. Proportion genotyped, the number of genotypes estimated by each software (Ngenotypes) divided by the total number of reference genotypes per locus across all replicates and samples. Genotyping success, the number of genotypes that coincide with the consensus (Nsuccessful) divided by the total number of genotypes estimated by the software per locus across all replicates and samples (Ngenotypes). Proportion ADO, the number of heterozygote genotypes for which only one of the two alleles could be genotyped (NADO) divided by the number of heterozygote genotypes in the reference. Proportion FA, the number of genotypes including a false allele (NFA) divided by the total number of reference genotypes. Values are shown as mean ± standard error per locus.默认最低测序深度（read depth）：AmpliSAS为100条测序读段（reads），Megasat为50条测序读段，CHIIMP为500条测序读段，MicNeSs为16条测序读段。分型比例：指各软件估算的基因型数量（Ngenotypes）除以所有重复实验与样本中每个位点的参考基因型总数。基因分型成功率：指所有重复实验与样本中，各软件在单个位点估算的基因型总数（Ngenotypes）内，与共识基因型一致的基因型数量（Nsuccessful）所占的比例。等位基因脱扣（ADO）比例：指参考基因型集合中，仅能检出两个等位基因其中之一的杂合基因型数量（NADO）除以杂合基因型总数量。假等位基因（FA）比例：指包含假等位基因的基因型数量（NFA）除以参考基因型总数。所有数值以单个位点的平均值±标准误形式展示。