Additional file 1: Table S1. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

List of L. bicolor TFs identified in silico displaying similarities with characterized TFs (183 proteins); sharing similarities with predicted or hypothetical proteins with no proved role as transcriptional regulators (94 proteins); sharing similarities with proteins identified as transcriptional regulators without DBD (8 proteins). General information of protein is given (e.g., protein ID from both L. bicolor genome version 1 and version 2, length of the polypeptide, TF name, EST support). Accession number, Description, Species, % identity, E-value and Score are related to BLAST results using L. bicolor protein as query against fungal NCBI database. m.c. = manually curated. Best Blast reciprocal hit = “YES” indicates that the TF was positive to the Best reciprocal hit analysis. BLAST masked DBD = “YES” indicates that L. bicolor TF was still similar to the characterized protein after masking its DBD in a BLAST search. See Methods section for a detailed description. TFs retrieved from and functionally validated by the TAT screen are in bold. (XLSX 48 kb)本数据集收录了经计算机辅助（in silico）鉴定得到的双色蜡蘑（Laccaria bicolor, L. bicolor）转录因子（Transcription Factor, TF）：其中183个蛋白与已功能注释的转录因子具有序列相似性；94个蛋白与经预测或假定、尚未证实具备转录调控功能的蛋白具有序列相似性；另有8个蛋白被鉴定为转录调控因子但不包含DNA结合域（DNA-binding Domain, DBD）。数据集包含蛋白的基础信息，例如双色蜡蘑基因组版本1与版本2对应的蛋白ID、多肽链长度、转录因子名称以及表达序列标签（Expressed Sequence Tag, EST）支持情况。条目所附的登录号、功能描述、物种来源、序列一致性百分比（% identity）、E值（E-value）以及比对得分（Score），均来自以双色蜡蘑蛋白为查询序列、针对NCBI真菌数据库进行的BLAST（基本局部比对搜索工具）比对结果。其中“m.c.”代表人工手动注释（manually curated）；“Best Blast reciprocal hit = "YES"”表示该转录因子通过了双向最佳BLAST比对验证；“BLAST masked DBD = "YES"”表示在BLAST搜索中对该双色蜡蘑转录因子的DNA结合域进行序列屏蔽后，其仍与已注释的功能蛋白保持序列相似性。详细说明请参见方法部分。通过TAT screen筛选获取并经功能验证的转录因子以加粗字体标注。本数据集文件为XLSX格式，大小48KB。