Additional file 1 of A myxozoan genome reveals mosaic evolution in a parasitic cnidarian

Additional file 1: Table S1. Statistics of the Pacbio sequencing and assembly of the Myxobolus honghuensis genome. Table S2. Length distribution of the Pacbio subreads. Table S3. Estimated genome characteristics. Table S4. Clean reads mapping result. Table S5. Details of the gene prediction results. Table S6. Integration annotation file of Myxobolus honghuensis genes. Table S7. Composition of repetitive sequences in the Myxobolus honghuensis genome. Table S8. Syntenic analysis of Myxobolus honghuensis and 6 other cnidarian genomes. Table S9. Presence and absence of nuclear-encoded proteins that are targeted to mitochondria in the Myxobolus honghuensis proteome. Table S10. Summary of orthologous and paralogous gene families in Myxobolus honghuensis and 15 other sequenced cnidarian genomes. Table S11. Annotation of the unique genes in Myxobolus honghuensis genome. Table S12. Distribution of expanded and contracted gene families among the 16 cnidarian genomes. Table S13. Annotation of the expanded gene families in Myxobolus honghuensis genome. Table S14. Annotation of the contracted gene families in Myxobolus honghuensis genome. Table S15. Positively selected genes identified in Myxobolus honghuensis genome. Table S16. Presence and absence of 20 meiosis-related genes in the genome and transcriptome of Myxobolus honghuensis. Table S17. KEGG pathway enrichment analysis of unique genes. Table S18. KEGG pathway enrichment analysis of expanded and contracted genes. Table S19. Presence and absence of ANTP class Homeobox genes in M. honghuensis and other free-living cnidarians. Table S20. Details of sampling and sequencing. Table S21. Results for mapping Illumina genome sequences to the common carp genome (NCBI: GCF_000951615.1) using SOAP. Table S22. Statistics of the bacterial genome assembly. Table S23. Information of the species used in comparative genomics.