Gene phylogenies based on Bayesian analysis

Phylogenetic analyses of genes of interest (EPR, HB, NFP, HCT, EPR, NIN, and RPG). Amino acid sequence alignments were generated using MAFFT version 7.017. Analyses were performed using MrBayes version 3.2.6 running 2.2 million generations, setting gamma-distributed rate variation and integrating over different models of amino acid sequence evolution (aamodelpr=mixed). For NFP analyses were based on the full-length sequences as well as separately on the kinase domain only.

对目的基因（EPR、HB、NFP、HCT、EPR、NIN及RPG）开展系统发育分析。使用MAFFT v7.017软件完成氨基酸序列联配。分析采用MrBayes v3.2.6软件进行，设置迭代次数为220万代，启用伽马分布速率变异模型，并整合多种氨基酸序列进化模型（参数aamodelpr=mixed）。针对NFP基因的分析同时基于其全长序列以及单独的激酶结构域序列展开。