Supplement 1. Winbugs version 1.4 code for the Cormack-Jolly-Seber model with random effects and its modification for accommodating handling effects at State Pond.

File List WinbugsStatePond.txt – Winbugs 1.4 code as text. WinbugsStatePond.zip – All files at once. Description The WinbugsStatePond.txt file contains two models which may be pasted into the Winbugs 1.4 software to perform the capture–recapture analyses described in the original paper for State Pond. The response X, a matrix, is not the standard capture history matrix. Instead, X indicates the capture history which appears following the Bugs language comment symbol (#) in the 8 lines which relate survival (psi), capture probability (p), and chi parameters to the multinomial cell probabilities (theta). Random effects (g) of release groups, and the covariate data, svl, Date, Stage, Trial and Release are related to survival, capture or chi probabilities using the logit link. Further documentation is provided in the text file itself.文件列表： WinbugsStatePond.txt——文本格式的WinBUGS 1.4代码 WinbugsStatePond.zip——包含全部文件的压缩包 说明 WinbugsStatePond.txt 文件包含两个模型，可直接粘贴至WinBUGS 1.4软件中，用于执行原论文中针对State Pond种群的捕获-再捕获（capture-recapture）分析。 响应变量X为矩阵形式，并非标准的捕获历史矩阵。实际上，X所指代的捕获历史信息，会出现在8行BUGS语言代码中，该8行代码用于将生存参数（psi）、捕获概率（p）与chi参数和多项分布单元格概率（theta）建立关联，且相关内容位于注释符（#）之后。 释放组的随机效应（g），以及协变量数据svl、Date、Stage、Trial与Release，均通过logit连接函数与生存、捕获或chi概率建立关联。 该文本文件本身已附带更多详细说明文档。