Seurat more cells A.2

<strong>seurat v3 object</strong> <br> <strong>ASSAYS:</strong> ADT: Antibody expression data RNA: mRNA expression data <br> <strong>DIMENSIONALITY REDUCTION</strong> projAML: Data was projected on the main AML dataset from Cohorts A and B. pca: pca computed on the 2000 most variable features umapSimple: umap computed from first 15 principal components <br> <strong>METADATA</strong> patient: Patient ct: Projected cell type (Triana et al., 2021) ct_simple: Simplified projected celltype batch: Cells come either from total bone marrow or CD34+ enrichment using either FACS or MACS seurat_clusters: unsupervised clusters obtained running the standard Seurat workflow proj_cluster: Projected cluster from main AML dataset leukemia_prob: CloneTracer leukemia probability status: Binarized status (healthy, leukemic, unsure) clonal_probability: CloneTracer clonal probability clone: Binarized clone dormancy_score: score assessing the dormancy of cells based on Zhang 2021 and Cabezas-Wallscheid 2017 gene lists.