Additional file 2 of The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles

Additional file 2: Table S0. Correspondence of gene names to previously published peptide names. Table S1. Mean Id% of the different functional regions of vpg. Table S2. Mean Id% along the promoter of vpg families. Table S3. Expression levels of vpg in venom glands. Table S4. Gene encoding TF with TPM over 40 and evalue of annotation over 10-10. TPM in the rest of the abdomen is also indicated (TPM body) as the ratio of expression between venom gland and abdomen (Ratio). Matrix indicate if matrices are available and the site where to find them (FFS : fly factor survey database, jaspar : jaspar database). Table S5. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of each vpg families. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones. Table S6. Enriched motif predicted by amadeus on A1 promoters (-400 pb among the TSS, motif length 10, all Jaspar Database/Drosophila database, Enrichment analysis).Table S7. Enriched motif predicted by amadeus on A2 promoters, -400 pb among the TSS, motif length 12, all Jaspar Database/Drosophila database, Enrichment analysis. Table S8. Frequencies of TFBS on promoters (1000 pb among the TSS) of all T bicarinatum genes compared to specific frequencies on promoters of selected TG. For CnC BS frequencies have been evaluated within the 500 pb among TSS. In bold : frequencies above random ones.