All demultiplexed sequence data from aDNA, raw ASV tables and metadata from wDNA and aDNA
收藏Figshare2025-06-12 更新2026-04-08 收录
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https://figshare.com/articles/dataset/All_demultiplexed_sequence_data_from_aDNA_raw_ASV_tables_and_metadata_from_wDNA_and_aDNA/29310506/1
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<b>CO1_ASV_taxonomy_detailed.txt</b><b> </b>This file contains all Amplicon Sequence Variants (ASVs) recovered from sequence data processed through the Anacapa pipeline, corresponding to the <code>taxonomy_detailed.txt</code> output files generated by Anacapa. The dataset includes reads from both water samples and ARMS (Autonomous Reef Monitoring Structures) samples. For each ASV, the following details are provided:DNA sequenceRead abundance per sampleBlast alignment statisticsAssigned taxonomyTaxonomy confidence score (BCLA)Accession numbers of blast matches<b>df_table.txt</b>This file provides contextual information for each sample, including the following columns:sample (corresponding metabarcode for each sequence file)sample_name (abreviatura del sample nmame)Site (collection location)ocean_depthfraction_size (for ARMS samples; indicates size fraction category: sessile, 2000-500 μm [mobile_500], and 500-100 μm [mobile_100])replicate (replicate identifier)sample_media (sample type: <i>ARMS</i> or <i>water</i>)season (for water samples; e.g., summer, winter)sample_type (categorization as <i>sample</i> or <i>control</i>, with control type specified if applicable)<b>demutiplexed_arms (2)</b><br>The dataset contains compressed (zip) files with 108 paired FASTQ files (R1 and R2), representing demultiplexed ARMS eDNA samples sequenced for COI. Files follow a structured naming convention indicating sample attributes. Complete sample information is available in the metadata file (df_table.txt).
提供机构:
Sánchez López, Javiera
创建时间:
2025-06-12



