Tree files (as newick and pdf files) and corresponding alignments for "Early eukaryotic origins and metazoan elaboration of MAPR family proteins"

"MAPR_3_protein_alignment_94aa_LG_R5_newick.txt": raw tree file in newick format based on alignment subjected to PREQUAL-filtering and Divvier-clustering. After trimming, the central conserved domain (94 amino acid residues in human PGRCM1) has been extracted and used for tree reconstruction with IQ-TREE (selected model based on ModelFinder: LG+R5). Corresponds to Figure 1 and S1. "MAPR_3_protein_alignment_94aa_LG_R5.tre.pdf": tree as pdf file, colored by lineage and rooted at the NEUFC-clade "MAPR_3_protein_alignment_94aa_trimal0.01.fasta": trimmed 94 aa-alignment used for tree reconstruction "MAPR_3_protein_alignment_126aa_LG_R7_newick.txt": raw tree file in newick format based on 126 amino acid residue alignment after trimming, used for tree reconstruction with IQ-TREE (selected model based on ModelFinder: LG+R7) "MAPR_3_protein_alignment_126aa_LG_R7.tre.pdf": tree as pdf file, colored by lineage and rooted at the NEUFC-clade "MAPR_3_protein_alignment_126aa_trimal0.8.fasta": trimmed 126 aa-alignment used for tree reconstruction"MAPR_3_protein_alignment_94aa_LG_R5_newick.txt": 基于经PREQUAL过滤（PREQUAL-filtering）与Divvier聚类（Divvier-clustering）处理的序列联配所得的Newick格式（Newick format）原始系统发育树文件。经序列修剪后，提取了人类PGRCM1的中央保守结构域（含94个氨基酸残基），并使用IQ-TREE进行系统发育树重构，进化模型由ModelFinder选定为LG+R5。该文件对应图1与补充图S1 "MAPR_3_protein_alignment_94aa_LG_R5.tre.pdf": 以进化谱系着色、以NEUFC分支为根节点的系统发育树PDF文件 "MAPR_3_protein_alignment_94aa_trimal0.01.fasta": 用于系统发育树重构的经修剪的94个氨基酸序列联配的Fasta格式文件 "MAPR_3_protein_alignment_126aa_LG_R7_newick.txt": 基于经修剪的126个氨基酸残基序列联配所得的Newick格式原始系统发育树文件，使用IQ-TREE进行系统发育树重构，进化模型由ModelFinder选定为LG+R7 "MAPR_3_protein_alignment_126aa_LG_R7.tre.pdf": 以进化谱系着色、以NEUFC分支为根节点的系统发育树PDF文件 "MAPR_3_protein_alignment_126aa_trimal0.8.fasta": 用于系统发育树重构的经修剪的126个氨基酸序列联配的Fasta格式文件