Additional file 2 of Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress

Additional file 2: Table S1. Sequencing and mapping statistics for each sample. Table S2. Annotations of novel mRNAs. Table S3. Primer sequences for qRT-PCR. Table S4. Predicted TFs in the DEMs. Table S5. Cis-target transcripts of DELs. Table S6. Trans-target transcripts of DELs. Table S7. KEGG enrichment analysis for target mRNAs. Table S8. GO enrichment analysis for target mRNAs. Table S9. Expressions of DETs for WGCNA. Table S10. The 19 co-expressed genes of the bHLH TF, which contained bHLH binding motifs. Table S11. Prediction of lncRNA acting as miRNA decoys. Table S12. Identification of DELs acting as miRNA targets.

附加文件2：表S1。各样本的测序与比对统计数据。表S2。新型mRNA的注释信息。表S3。实时荧光定量PCR（qRT-PCR）引物序列。表S4。差异表达mRNA（DEMs）中预测的转录因子（Transcription Factor, TFs）。表S5。差异表达长链非编码RNA（DELs）的顺式靶标转录本。表S6。差异表达长链非编码RNA（DELs）的反式靶标转录本。表S7。靶标mRNA的京都基因与基因组百科全书（KEGG）富集分析结果。表S8。靶标mRNA的基因本体（GO）富集分析结果。表S9。用于加权基因共表达网络分析（WGCNA）的差异表达转录本（DETs）表达量数据。表S10。碱性螺旋-环-螺旋（bHLH）转录因子对应的19个共表达基因，该基因集包含bHLH结合基序。表S11。作为微小RNA（miRNA）诱饵的长链非编码RNA（lncRNA）预测结果。表S12。作为微小RNA（miRNA）靶标的差异表达长链非编码RNA（DELs）鉴定结果。