Additional file 2: of Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis

Table S1. Watermelon Plant introduction accessions (PIs) used in the present study. Table S2. Genome wide SSR primers developed in the watermelon genome. Table S3. List of cross-species SSR markers between watermelon and cucumber identified by in silico PCR. Table S4. List of cross-species SSR markers between watermelon and melon identified by in silico PCR. Table S5. List of conserved SSR markers among watermelon, melon and cucumber genomes. Table S6. Syntenic blocks shared for cucumber, melon and watermelon genomes. Table S7. Information of fosmid clones used in fluorescence in situ hybridization (FISH). Table S8. List of 192 SSR primers used for polymorphism screening in watermelon. Table S9. Statistic of observed (Na) and effective number of alleles (Ne), observed (Ho) and expected heterozygosity (He), polymorphic information content (PIC) and Shannonâ s information index (I) for 32 SSR markers. (XLSX 3673Â kb)

表S1 本研究中使用的西瓜种质引入系（Plant Introduction，PIs）列表。表S2 基于西瓜基因组开发的全基因组简单序列重复（Simple Sequence Repeat，SSR）引物。表S3 通过电子PCR（in silico PCR）鉴定得到的西瓜与黄瓜间跨物种SSR标记列表。表S4 通过电子PCR（in silico PCR）鉴定得到的西瓜与甜瓜间跨物种SSR标记列表。表S5 西瓜、甜瓜与黄瓜基因组间保守SSR标记列表。表S6 黄瓜、甜瓜与西瓜基因组共有的共线性区块。表S7 荧光原位杂交（FISH）所用Fosmid克隆的相关信息。表S8 用于西瓜多态性筛选的192对SSR引物列表。表S9 32个SSR标记的观察等位基因数（Na）、有效等位基因数（Ne）、观察杂合度（Ho）、期望杂合度（He）、多态信息含量（PIC）及香农信息指数（I）统计结果。（XLSX格式，3673 KB）