Gene trees and alignments for phylogenomic analysis supporting transfer of Coniothyrium glycines to the genus Aristastoma

Gene trees and alignments for phylogenomic analysis included in the manuscript submitted to Mycologia as "Phylogenomic analysis supports the transfer of Coniothyrium glycines, a soybean pathogen and USDA Select Agent, to the genus Aristastoma" Repository includes two datasets, both generated through the BUSCO_phylogenomics pipeline. Both include a folder of individual gene trees for the BUSCO genes annotated in each analysis, a file with all the concatenated trees ('ALL.tree'), a superalignment of all the BUSCO proteins with a partition file. The 'ALL.tree' file is easily compatible with ASTRAL-IV and the supermatrix with the partition with IQ-tree, for example. Output trees and code to generate figures included in the publication are available in the associated github repo: https://github.com/ngreatens/Aristastoma. Necessary context is provided in the publication. Reach out to [e-mail] with questions.提交给《Mycologia》期刊、题为《系统发育组学分析支持将大豆病原菌Coniothyrium glycines（美国农业部（USDA）精选有害生物）转移至Aristastoma属》的手稿中所包含的系统发育组学分析用基因树与序列比对数据集。本数据集仓库包含两套数据集，均通过BUSCO_phylogenomics流程生成。两套数据集均包含：各分析中注释的BUSCO基因对应的单基因树文件夹、包含所有合并后基因树的文件（命名为'ALL.tree'），以及附带分区文件的所有BUSCO蛋白超级联配序列数据集。例如，'ALL.tree'文件可直接兼容ASTRAL-IV软件，而带分区文件的超级矩阵则可用于IQ-tree等系统发育分析工具。本论文中所用的输出基因树及绘图代码可在关联的GitHub仓库获取：https://github.com/ngreatens/Aristastoma。相关背景信息已在论文中提供。如有疑问，请致信[e-mail]。