Additional file 2: Supplementary tables. of Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia

Table S1. Overlap and enrichment of repeated elements along dREs. Table S2. Enrichment of dREs in the regulatory domains of CLL-up/down-regulated genes. Table S3. Enrichment of gene groups to Gene Ontology biological processes. Table S4. Density of GWAS SNPs associated with agglomerated traits along dRE. Table S5. Association of dREs to individual GWAS traits. Table S6. Prediction results and GWAS knowledge of the cancer-related GWAS SNPs which exhibit the significant allele frequency difference between CLL and normal samples. Table S7. Enrichment of TFBSs along dREs. Table S8. Enrichment of TFBS loss caused by CLL-associated alleles along lost dREs. Table S9. Enrichment of TFBS gain caused by CLL-associated alleles along gained dREs. (XLSX 64 kb)