MOESM3 of Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome
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Additional file 3. This file contains all supplementary tables relating to lncRNA identification via the conservation of synteny. Table S3. lncRNAs inferred in one species by the genomic alignment of a transcript assembled with the RNA-seq libraries from a related spdecies. Table S12. Presence of intergenic lncRNAs both in sheep and cattle, in regions of conserved synteny. Table S13. Presence of intergenic lncRNAs both in sheep and goat, in regions of conserved synteny. Table S14. Presence of intergenic lncRNAs both in cattle and goat, in regions of conserved synteny. Table S15. Presence of intergenic lncRNAs both in sheep and humans, in regions of conserved synteny. Table S16. Presence of intergenic lncRNAs both in goat and humans, in regions of conserved synteny. Table S17. Presence of intergenic lncRNAs both in cattle and humans, in regions of conserved synteny. Table S18. High-confidence lncRNA pairs, those conserved across species both sequentially and positionally.
附加文件3。本文件收录了所有与基于共线性(synteny)保守性鉴定长链非编码RNA(long non-coding RNA,lncRNA)相关的补充表格。表S3:通过对由近缘物种RNA-seq文库组装得到的转录本进行基因组比对,在单一物种中推断得到的长链非编码RNA。表S12:绵羊与牛共线性保守区域内同时存在的基因间长链非编码RNA。表S13:绵羊与山羊共线性保守区域内同时存在的基因间长链非编码RNA。表S14:牛与山羊共线性保守区域内同时存在的基因间长链非编码RNA。表S15:绵羊与人类共线性保守区域内同时存在的基因间长链非编码RNA。表S16:山羊与人类共线性保守区域内同时存在的基因间长链非编码RNA。表S17:牛与人类共线性保守区域内同时存在的基因间长链非编码RNA。表S18:高置信度长链非编码RNA对,即跨物种在序列与位置上均保守的长链非编码RNA对。
创建时间:
2023-06-28



