Additional file 6 of Simplitigs as an efficient and scalable representation of de Bruijn graphs

Additional file 6. Detailed information for the multiple pan-genomes k-mer indexing experiment. Supplementary Table S19. List of all genomes used for building the pan-genomes (accession code, version, species, filename, number of sequences, genome size [bp]); Supplementary Table S20. List of species and the number of genomes included. Supplementary Table S21. Characteristics of the resulting simplitigs and unitigs of individual species pan-genomes for k = 19,23,27,31. Supplementary Table S22. Characteristics of the resulting simplitigs and unitigs for the All-dataset and Solid-dataset and k = 19,23,27,31. Supplementary Table S23. Performance of k-mer querying for the pan-genome: memory footprint, index loading time and time to query 10 million k-mers using BWA (individual repetitions).附加文件6：多泛基因组k-mer索引实验详细信息。补充表S19：用于构建泛基因组的全部基因组列表（包含登录号、版本、物种、文件名、序列数量、基因组大小[bp]）；补充表S20：纳入研究的物种及对应基因组数量列表；补充表S21：当k取值为19、23、27、31时，各物种泛基因组所得simplitigs与unitigs的特征参数；补充表S22：当k取值为19、23、27、31时，全数据集（All-dataset）与固体数据集（Solid-dataset）所得simplitigs和unitigs的特征参数；补充表S23：泛基因组k-mer查询性能测试结果：内存占用、索引加载时长，以及使用BWA查询1000万条k-mer的耗时（各次独立重复实验结果）。