Assembly and annotation of the genome of a lipid accumulator strain (LAS) obtained from the biolistic genetic transformation of Aurantiochytrium limacinum strain CCAP_4062/1
收藏Mendeley Data2024-03-27 更新2024-06-27 收录
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资源简介:
The deposited files include the genome sequence and annotation of an Aurantiochytrium limacinum strain CCAP_4062/1 obtained by biolistic genetic transformation called LAS (Lipid Accumulator Strain). The following files are available: - LAS_Assembly.fasta = Genome assembly obtained with Pacbio Sequel I long reads - Augustus_Annotation_model_LAS.gtf = GTF file containing the gene models obtained with Augustus - LAS_Gene_Descriptions.txt = gene descriptions obtained from the predicted proteome using the Pannzer2 Pipeline - LAS_GO_Annotation.txt = Gene Ontology Annotation obtained from the predicted proteome using the Pannzer2 Pipeline
本存档文件包含通过基因枪遗传转化获得的LAS(脂质积累菌株,Lipid Accumulator Strain)柠檬色金藻(Aurantiochytrium limacinum)菌株CCAP_4062/1的基因组序列与注释信息。可用文件如下:
- LAS_Assembly.fasta:采用Pacbio Sequel I长读长测序数据组装得到的基因组组装文件
- Augustus_Annotation_model_LAS.gtf:通过Augustus软件预测得到的基因模型GTF(Gene Transfer Format)文件
- LAS_Gene_Descriptions.txt:依托Pannzer2流程对预测蛋白质组进行注释后得到的基因功能描述文件
- LAS_GO_Annotation.txt:依托Pannzer2流程对预测蛋白质组进行注释后得到的基因本体(Gene Ontology, GO)注释文件
创建时间:
2024-01-23



