Additional file 3: of Improved methods and resources for paramecium genomics: transcription units, gene annotation and gene expression

Gene expression atlas. All P. tetraurelia v2 genes (‘ID’) with their normalized RNA-Seq counts (last 15 columns, sample labels as in Additional file 2: Table S1) are given. The mean value for biological replicates are given in the columns VEG, MEI, FRG, DEV1, DEV2/3, DEV4. The ‘P-value’ ‘Significant’ and ‘Expression profile’ refer to the differential gene expression analysis (cf. Methods). ‘Note’ is the description of the best SwissProt BLASTP match. The GO ID and GO description were inferred electronically using InterProScan. The Biological Process GO term associated with the highest scoring protein domain is given. (TSV 12379 kb)