IBM Code and Input Data Associated with Brenden, T.O., L.N. Ivan, and T.P. Loch. Reducing Flavobacterium psychrophilum transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture

The Fortran code and description of input data needed for running the code is provided for the individual-based model described in Brenden, T.O., L.N. Ivan, and T.P. Loch. In press. Reducing <em>Flavobacterium psychrophilum</em> transmission risk in raceways via hatchery-rearing practices: an individual-based modeling evaluation. Aquaculture<br> The model is designed to evaluate how rearing practices could limit <em>F. psychrophilum</em>-induced losses of <em>Oncorhynchus mykiss</em> in flow-through, partial-reuse raceway systems. However, the code could be extended for other purspose, such as how immunization procedure might limit disease outbreak. <br> How to Use Hatchery IBM.doc - Description of the IBM, steps for running, and description of the input files the IBM is expecting.<br> Input_CSV_files.zip - .zip file containing all the input files needed for running the IBM<br> HatcheryVaccination_pub.f95 - IBM model programmed in Fortran (expects a gfortran compiler)<br>本数据集提供了Brenden T.O.、Ivan L.N.与Loch T.P.待刊论文中所述基于个体的模型（individual-based model, IBM）所需的Fortran代码，以及运行该代码所需的输入数据说明。该论文题为《通过孵化场养殖策略降低水道中嗜冷黄杆菌（*Flavobacterium psychrophilum*）的传播风险：一项基于个体的模型评估》，发表于《Aquaculture》（水产养殖），目前处于待刊状态。 本模型旨在评估在流水式部分回用养殖水道系统中，养殖策略如何限制嗜冷黄杆菌导致的虹鳟（*Oncorhynchus mykiss*）死亡。此外，该代码可扩展至其他研究场景，例如评估免疫程序如何抑制疾病暴发。 《How to Use Hatchery IBM.doc》：该文档对该基于个体的模型进行了说明，详述了模型运行步骤以及模型所需的输入文件的相关说明。 《Input_CSV_files.zip》：该压缩文件包含运行该基于个体模型所需的全部输入文件。 《HatcheryVaccination_pub.f95》：采用Fortran语言编写的基于个体的模型代码，需使用gfortran编译器进行编译。