Additional file 1 of Pathoadaptive evolution and clonal dissemination of community- associated methicillin-resistant Staphylococcus aureus in Egypt

Supplementary Material 1: Supplementary file 1: Assembly statistics for 123 CA-MRSA isolates. Supplementary file 2: Pie chart for Pangenome analysis. Supplementary file 3: Typing results for 123 CA-MRSA isolates. Supplementary file 4: Association between phenotypic antimicrobial resistance patterns and clonal complexes among CA-MRSA isolates. Supplementary file 5: Distribution of antibiotic resistance profiles among the 123 CA-MRSA isolates. Supplementary file 6: Distribution of virulence profiles among the 123 CA-MRSA isolates. Supplementary file 7: Individual accession numbers of CA-MRSA isolates. Supplementary file 8: Distribution of antibiotic resistance genes across CA MRSA sequence types (STs) in Egypt. Supplementary file 9: Association between CA-MRSA clonal complexes (CCs) and antimicrobial resistance genotypes. Supplementary file 10: Association between CA-MRSA isolates clonal complexes (CCs) and antimicrobial resistance phenotypes