RNA-seq and ATAC-seq of WT and Gli3-/- zebrafish

WE collected EGFP cells (Gli3 positive cells) from CNE14:EGFP transgenic zebrafish at 55 hours post fertilization (hpf). RNA-seq was performed on 3 wildtype (WT) and 3 Gli3-/- replicates. ATAC-seq was performed using EGFP cells from 3 WT replicates and using whole embryo cells from 2 WT replicates. These files reveal presumable Gli3 target genes.