GWAS summary statistics on Major Depressive Disorder

This file contains the summary statistics from genome wide association study of Major Depressive Disorder in 10,640 Han Chinese women in the CONVERGE Consortium<br>The columns are: <br>chr: ChromosomeSNP: PositionRSID: RSIDA1: Effect allele (usually minor) A2: Other allele (usually major)FRQ: frequency of effect allele OR: Odds ratio from logistic regression (with 10 PCs as covariates)SE: Standard error of ORP: P value of association from logistic regressionfrq_1kgp: Minor allele frequency at this locus in 1000 Genomes Phase 1 ASN hwe_p: P value for HWE info: Imputation information score at this locus <br>Note: This page has been updated to provide summary stats from logistic regression as odds ratios from logistic regression have proven to be more useful and less prone to ascertainment bias in a number of downstream analyses such as heritability and genetic correlation estimation. This is particularly the case for ascertained case-control data like CONVERGE. Previous summary stats from FastLMM are removed from this site to prevent confusion, but can be requested through email. The P values of association between the two sets are comparable (see Cai et al, Nature 2015 for details). <br>