PlantMetWiki BGC crosslinks: MIBiG and plantiSMASH to RDF
收藏资源简介:
RDF Turtle files linking biosynthetic gene cluster (BGC) data from MIBiG (curated) and plantiSMASH (predicted) to the PlantMetWiki / WikiPathways pathway knowledge graph, derived from PlantCyc 17.0. BGCs are typed as pmw:BiosyntheticGeneCluster and connected to pathway genes via RO:0000051 (has_part). For Arabidopsis thaliana, direct SPARQL joins are enabled through shared identifiers.org/tair.name/ IRIs. Includes VoID metadata, input gene-cluster membership JSON files, and a summary table of BGC–pathway gene crosslinks (199 unique links across 38 BGCs, 50 genes, and 109 metabolic pathways for Arabidopsis thaliana).
本数据集包含用于关联两类生物合成基因簇(biosynthetic gene cluster, BGC)数据与源自PlantCyc 17.0的PlantMetWiki / WikiPathways通路知识图谱的RDF Turtle格式文件:其中BGC数据分别来自经人工审校的MIBiG数据库,以及plantiSMASH预测得到的结果。所有BGC均被标注为pmw:BiosyntheticGeneCluster类型,并通过关系本体(Relation Ontology, RO)中的RO:0000051(has_part,即“具有部分”)属性与通路基因建立关联。针对拟南芥(Arabidopsis thaliana),可通过共享的identifiers.org/tair.name/ 国际资源标识符(Internationalized Resource Identifier, IRI)实现直接SPARQL连接。此外,该数据集还包含关联数据集词汇表(Vocabulary of Interlinked Datasets, VoID)元数据、基因簇成员关系输入JSON文件,以及一份拟南芥的BGC-通路基因交联汇总表,该表涵盖38个BGC、50个基因与109条代谢通路间的199条唯一交联记录。



