Additional file 1 of Comparative analysis of chloroplast genome structure and molecular dating in Myrtales

Additional file 1: Figures S1–S6. are phylogenetic relationships inferred by Maximum Likelihood and Bayesian inference based on: coding genes; noncoding loci; the LSC (the Large Single-Copy); the SSC (the Small Single-Copy); NO-IRa data set (data set composition is described in the methods) and IRb (Inverted Repeat region). Support values are maximum likelihood bootstrap support/Bayesian posterior probability. The families of Myrtales are indicated by different colors. For each figure, the inset shows the same tree as a phylogram (except for some inconsistencies in the phylogenetic relationships of IR dataset construction). The support value on the branch is bootstrap value/Bayesian posterior probability: “*” means 100% /1.0 support value, and “-” means bootstrap value/Bayesian posterior probability is less than 60 / 0.7. The families of Myrtales are represented by different colors. The small picture in the upper left corner is the ML phylogenetic tree (showing branch length).

附加文件1：图S1~S6展示了通过最大似然法与贝叶斯推断，基于编码基因、非编码基因座、大单拷贝区（Large Single-Copy，LSC）、小单拷贝区（Small Single-Copy，SSC）、不含IRa的数据集（数据集组成详见方法部分）以及反向重复区（Inverted Repeat region，IRb）推导得到的系统发育关系。支持值采用最大似然法自展支持率/贝叶斯后验概率的格式。桃金娘目（Myrtales）各科以不同颜色标注。每幅图的内嵌图均展示与主树一致的分支进化图（仅IR数据集构建得到的系统发育关系存在部分不一致之处）。分支上的支持值格式为自展支持率/贝叶斯后验概率：其中"*"代表支持值为100%/1.0，"-"代表自展支持率或贝叶斯后验概率低于60/0.7。桃金娘目（Myrtales）各科以不同颜色标注。左上角的小图为展示分支长度的最大似然法系统发育树。