Additional file 5 of Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos

Additional file 5: Supplementary Table S1. 3654 species used in probe design. Supplementary Table S2. The table of 568 representative species ID. Supplementary Table S3. Evaluation of designed probe. Supplementary Table S4. The bamboo species in this study. Supplementary Table S5. The table of bamboo plastid sequences from NCBI. Supplementary Table S6. The species used for species tree construction. Supplementary Table S7. Coverage and depth analysis of pan-CpGenome. Supplementary Table S8. Align the probes to 468 complete chloroplast genomes, which did not contain the sequences used to design the probes. Supplementary Table S9. The statistics of assembled plastid sequences after redundancy removing. Supplementary Table S10. Evaluation for target enrichment and assemblies.

附加文件5：补充表S1。本研究探针设计所用的3654个物种。补充表S2。568个代表性物种标识符表。补充表S3。所设计探针的性能评估。补充表S4。本研究涉及的竹类物种。补充表S5。来自NCBI的竹种质体序列表。补充表S6。用于构建物种树的物种。补充表S7。泛叶绿体基因组（pan-CpGenome）的覆盖度与深度分析。补充表S8。将探针比对至468个完整叶绿体基因组（该基因组不含用于探针设计的序列）。补充表S9。去冗余后组装的质体序列统计信息。补充表S10。目标富集与组装结果的性能评估。