Xenium benchmarking- xenium formatted to AnnData 3 (miscellaneous)
收藏资源简介:
This repository contains Xenium datasets formated to AnnData format for benchmarking the characteristics and performance of Xenium (Marco Salas et al., 2024). Please visit https://github.com/Moldia/Xenium_benchmarking to obtain further information about the datasets. On summary, AnnData contains the expression of profiled cells with some metadata, including spatial position. In adata.obs['spots'] we also include the position of decoded reads as well as some additional metadata and quality. This repository is the part 3/4 of all repositories containing the datasets used in the study already formated to AnnData
本仓库存储了经AnnData格式转换后的Xenium数据集,用于基准测试Xenium的各项特性与运行性能(Marco Salas等,2024)。如需获取该数据集的更多详细信息,请访问https://github.com/Moldia/Xenium_benchmarking。简言之,AnnData包含了经表达谱分析的细胞的基因表达量数据及部分元数据,其中涵盖空间位置信息。在adata.obs['spots']字段中,我们还收录了解码后的读段位置信息,以及额外的元数据与质量控制相关指标。本仓库为该研究所用数据集相关全套仓库的第3/4部分,所有相关数据集均已转换为AnnData格式。



