SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system

SUPPORTING DATA:

Data from the manuscript of Pende N, Sogues A, et al., "SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system”

1-ALIGNMENTS/
Alignments used to reconstruct the FtsZ, FtsA and SepF phylogenies presented in the manuscript. For each protein, there are separate alignments for Bacteria and Archaea. For FtsZ and SepF there are also alignments that include both Bacteria and Archaea.

2-ALIGNMENTS_TRIMMED/
Trimmed version of the alignments in 1-ALIGNMENTS.

3- TREES/
Trees reconstructed from the alignments in 2-ALIGNMENTS_TRIMMED. For each tree, there is:

3.1-NEWICK/
The newick file (.treefile)

3.2-PDF_UNCOLLAPSED/
A corresponding figure in .pdf format.

3.3-PDF_COLLAPSED/
A corresponding figure in .pdf format, with monophyletic taxa corresponding to the same phylum collapsed.

4-CTDs/
FtsZ C-terminal domain alignments and WebLogos.

辅助数据集：
本数据集取自Pende N、Sogues A等人的研究手稿《SepF是古菌中的FtsZ锚定蛋白，兼具祖先型细胞分裂系统特征》。

1-ALIGNMENTS/
本文件夹包含用于重建该论文中呈现的FtsZ、FtsA与SepF系统发育树的序列联配（alignments）文件。针对每种蛋白质，分别设有细菌域（Bacteria）与古菌域（Archaea）的专属联配文件；针对FtsZ与SepF，还包含同时覆盖细菌与古菌的联合联配文件。

2-ALIGNMENTS_TRIMMED/
本文件夹包含1-ALIGNMENTS文件夹中序列联配的修剪版本。

3- TREES/
本文件夹包含从2-ALIGNMENTS_TRIMMED的联配文件重建得到的系统发育树，每棵树对应以下三类文件：
3.1-NEWICK/
存储NEWICK格式的树文件（文件后缀为.treefile）。
3.2-PDF_UNCOLLAPSED/
对应未折叠的PDF格式结果图。
3.3-PDF_COLLAPSED/
对应已折叠的PDF格式结果图，其中同一门的单系类群已折叠合并。

4-CTDs/
本文件夹包含FtsZ C端结构域的序列联配文件与WebLogo可视化结果。