RMSD of lowest-scoring models.

This table summarizes predictions of the AnchoredDesign benchmark. Each value represents the RMSD of the lowest-scoring model produced by AnchoredDesign for that structure using its standard protocol. The PDB column identifies the structure. The loop RMSD, IRMSD, and LRMSD columns describe the RMSD of the lowest-scoring prediction against the relaxed input structure. The input columns compare AnchoredDesign's output to the scorefunction-minimized crystal structures used as input. The crystal columns compare the same output to the unrelaxed crystal structures. The low values throughout indicate that AnchoredDesign does a good job recovering native interfaces starting from extended loops. The similarity of the input and crystal columns indicates that the relaxed starting structures are not far from the crystal structures.