Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species

This repository contains data generated as part of Figure 3 in Verbiest, et al. “Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species”. <br> Each file contains a list of short tandem repeats (STRs) identified in each species analyzed. Files are named “${genomebuild}.trf.filt.bed” where $genomebuild gives the name of the genome assembly used. Files are tab-delimited with columns: chromosome, start, end, repeat unit length, repeat unit sequence, full repeat sequence. <br> Code for generating these files can be found at https://github.com/gymreklab/STR-Evolution-Review. <br>

本仓库存储了Verbiest等人在论文《调控短串联重复序列的突变与选择过程造就跨物种遗传与表型多样性》（*Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species*）中用于生成图3的相关数据。
每份文件均包含所分析的各物种中鉴定出的短串联重复序列（short tandem repeats, STRs）列表。文件命名规则为「${genomebuild}.trf.filt.bed」，其中${genomebuild}指代所使用的基因组组装版本名称。文件采用制表符分隔格式，各列依次为：染色体、起始位点、终止位点、重复单元长度、重复单元序列、完整重复序列。
生成此类文件的代码可通过https://github.com/gymreklab/STR-Evolution-Review获取。